Door window installation advice needed

[Kisner]

After 3 1/2 years of restoration on my 68 coupe, I'm finally near completion. All that's left is re-installing the quarter windows, vent windows, door windows, inside quarter panels, rear seats, water shields, and door panels. Since I removed all the windows, I know how everything goes back and which screws to turn for adjustment. However, my question is on the inboard and outboard adjustment of the windows - shop manual doesn't go in enough detail. How far inward is the glass supposed to go. I wouldn't think it should touch the pinch weld area since when you shut the door it could shatter the window but I have no clue. Or, should it be adjusted to just snap inside the outer groove of the roof rail weatherstrip (weatherstrip over the doors)?