trans harness question
 

ok i swapped a guy my auto for his 5 spd setup.. he has a trans out of an 03 gt that was in his 01 cobra.. i have an 03 gt but we forgot to trade trans harnesses.. before i shipped mine and he shipped his i wanted to check on a few things.. will his 01 trans harness off the 4 valve plug into my 2 valve? if not what will i need off of his harness and what will he need off of mine? and i heard that the 03/04 gt computers are compatible with an auto an manual.. anyone have any input on this?