I cant help you with the technical part of your question and I have "0" first hand knowledge of superchargers.
But what I can tell you is I am a member of several mustang boards and have seen this question many times. By looking at your combo I would say you would get better performance and driveability without the FMU.
Most people ditch the FMU in your situation.
Later,
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92' LX-Big brakes, Lots and lots of suspension, GT40X heads, Ported cobra intake, stock cam, Vortech SC trim.
00' Lightning-Stock
88'CRX-13 second ego killer
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