If i were you, i'd just buy a V8 stang with engine problems and fix the engine problem instead. The GT's had stiffer suspension, better brakes, better cooling system, stronger rear axle/transmisison, etc. etc. It would cost you a fortune to try and swap it over to a 4.6L, a 5.0L wouldn't be bad, but unless you had another V8 donor car it would probably cost you AT LEAST 3,000 to buy the parts to swap over unless you found a ridiculously good deal.
Good luck, hope you find what you're looking for
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2005 Suzuki Hayabusa GSX1300-R
1980 Ford Thunderbird - 255 V8
ported heads, 5.0L ported stock headers, O.R. H-pipe and Flowmaster 2-chambers, dual roller timing chain
hi-po Mack Truck hood emblem 
1985 Mustang GT 5.0L T5, F-303, GT40p, headers, off-road h, flowmasters, MSD stuff, etc.
Sold 02/06/04 
1989 Mustang GT ET: 13.304@102.29 mph (5-24-03)
Sold - 1998 Mustang Cobra coupe, 1/4 mile - street tires: 13.843@103.41 (bone stock)
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