Re: 98 v6 to a 95 v6?
i believe that the 3.8's went to a split port design in '99 which is a harder swap because the heads are different, but the '98 should fit fine. you'll just have to use your intake manifold and all the sensors off your old engine since your '95 is eec-iv and '96+ engines are eec-v.
as for the rear axle, if you change the ratio, you'll need to change the speedometer gear, if it's a hall effect sensor instead of a gear you can't do much about it to get the right speedometer reading. the rear axles are both 7.5" ring gear axles with the same size rear brakes.
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2005 Suzuki Hayabusa GSX1300-R
1980 Ford Thunderbird - 255 V8
ported heads, 5.0L ported stock headers, O.R. H-pipe and Flowmaster 2-chambers, dual roller timing chain
hi-po Mack Truck hood emblem
1985 Mustang GT 5.0L T5, F-303, GT40p, headers, off-road h, flowmasters, MSD stuff, etc.
Sold 02/06/04 
1989 Mustang GT ET: 13.304@102.29 mph (5-24-03)
Sold - 1998 Mustang Cobra coupe, 1/4 mile - street tires: 13.843@103.41 (bone stock)
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